Sierra Leone bolters mpox response: WHO leads groundbreaking genomic surveillance and bioinformatics training | WHO | Regional Office for Africa


Despite reporting over 4,400 confirmed cases of mpox as of 27 June 2025, Sierra Leone has performed genomic characterization on only approximately 2.5% of these cases (108 sequences), representing a significant limitation in understanding viral evolution and informing targeted public health interventions. Currently, these genomic data are deposited in international repositories such as Pathoplexus, GISAID, and NCBI Virus; however, the disparity between outbreak detection and genomic data generation hampers real-time surveillance efforts.

The week-long workshop employed a multidisciplinary, hands-on approach combining didactic instruction, practical exercises, and group data analysis. The curriculum included:

  • Day 1: Introduction to genomic surveillance principles, sequencing technologies, and foundational bioinformatics tools such as Linux and Conda environments.
  • Day 2: Emphasis on sequencing data quality control (FastQC, MultiQC), read trimming (Fastp, Hostile), and genome assembly techniques utilizing reference-based (BWA, Cutadapt) and de novo (SPAdes) approaches.
  • Day 3: Variant detection and analysis (SAMtools, FreeBayes, Snippy), consensus sequence generation (Bcftools), and genome annotation (SnpEff, VEP).
  • Day 4: Phylogenetic analysis, clade classification (Nextclade, Nextstrain), and visualization using platforms such as GISAID, Pathoplexus, NCBI Virus, Microreact, iTOL, and Galaxy.
  • Day 5: Integration of all components through a case study simulating mpox outbreak response, culminating in data interpretation and strategic planning.

Walter Oguta, WHO AFRO EPI Analytics Specialist and the Lead Bioinformatics Trainer, underscored the practical value of the training, stating, “Translating genomic data into actionable public health strategies is the ultimate goal. Our aim was to equip participants with both technical proficiency and confidence to utilize these tools effectively.”

The Fediverse Passport: A needed tool.


The Fediverse Passport would be the central account for all users on the Fediverse.

How it would work

a. Upon signing up for the a platform on the Fediverse the user would be redirected to the "Create your Passport" You would create your unique username. Once signed up you would then have an account on every platform connected to the Fediverse.

b. If someone friends/follows you on one platform they would automatically follow you on all platforms. Insuring that communities and friends could stay connected across platforms.

c. The passport for the user would show your feed on all platforms and allow you to selected which platform you want to see your feed from, also allowing you to directly search your content so you could find a post for whatever reason you need.

d. For the subscriber it would show them your feed and allow them to easily find your content.

e. Tons of customization options including the ability to monetize and or set a subscription fee for the video, blogging, and other "arts" platforms.

Safe Guards

You would be allowed to set your privacy setting to, Public, Subscribers Only, Approve Subscribers, Mutual Friends only, Private (Requires link)

Benefit

Would allow stream less interaction across the whole Fediverse and really get it going. No more having to create a different account on each platform and now you can claim an identity and keep track of your communities, also each site would directly help "advertise" the others.

in reply to Sackeshi

There is also KeyOxide with solves part of it via cryptographic verification and I believe some fediverse platforms already support it: codeberg.org/keyoxide

Another Iranian Terrorist Sleeper Cell activated...

BREAKING NEWS: Shooting at Oglethorpe Mall leaves at least five injured after gunman opened fire in Savannah, Georgia

dailymail.co.uk/news/article-1…

europesays.com/uk/233206/ L’Escargot Bleu restaurant review — an Edinburgh institution moving with the times #Britain #Edinburgh #GreatBritain #Scotland #UK #UnitedKingdom
Unknown parent

mastodon - Link to source

Max Powers

I rage about all kinds of shit every day. This is no different. I'm not a pussy so I call out shit I don't like. It's my opinion. If you don't like it, you have the option to block or mute. Richard is man enough to take criticism. He defended himself well. I still don't like anime girl crap, I think it's gross but that's my opinion.
@a87b402ac081c8849b9d5bd4e39f2287f25709d3e3f79e784af1e8b38fefbdf1 @Richard @Cosmic
in reply to cm0002

Packs of kids ride bikes up and down my street all day long in the summer.

...While bozos on Nextdoor and elsewhere continually screech that they must be "up to something," and "where are the parents?" and other NIMBY horseshit.

These are the same dim bulbs who bitch about Kids These Days spending all their time in front of their screens and never going outside. Gee, maybe that's because every time they do go outside you try to call the cops on them?

in reply to dual_sport_dork 🐧🗡️

While bozos on Nextdoor and elsewhere continually screech that they must be "up to something," and "where are the parents?" and other NIMBY horseshit.


One of the main reasons I maintain a ND account, to tell these NIMBY types to STFU and let kids be kids LMAO

In my area though, ND is fairly balanced, so once I start commenting that in a post, others usually join in lol

Όλα μα όλα, απ τα ανθυγιεινά βιομηχανικά τρόφιμα, μέχρι την υγεία, την παιδεία, την ευημερία είναι ταξικά προβλήματα.

Και τι κάναμε;

Ξεχάσαμε τις ταξικές διαφορές, τον ταξικό εχθρό όπως έλεγαν παλιά και επικεντρωθήκαμε στον δικαιωματισμό, ξεχνώντας, παραβλέποντας πως σε ένα αταξικό κράτος ή έστω ένα κράτος δικαίου όλοι/ες/α είναι ίσοι και δεν χρειάζονται αγώνες δικαιωματικοί.

in reply to Fou

Τελευταία γίνεται χαμός με συνθήματα, memes κλπ κατά των δισεκατομμυριούχων.

Δεν είναι αυτοί το πρόβλημα, αλλά το σύστημα, που επιτρέπει την δημιουργία τους.

Ακόμη κι αν τους εξαφάνιζες όλους από προσώπου γης, το σύστημα θα έφτιαχνε νέους.

Το υπάρχον καπιταλιστικό - τεχνολογικό - ολιγαρχικό σύστημα είναι ο εχθρός μας

"Dr. Marwan Al-Sultan, director of the Indonesian Hospital, was just murdered by Israel in Gaza City when his house was bombed. He was known for his tireless service to the wounded and sick throughout the genocide. At least 7 of his family members were killed with him"

#Gaza #SaveGaza #StopIsrael #SanctionIsrael #BDS
#palestine #Israel #Politics #Genocide #PeaceNow #StopTheWar #CeasefireNow @palestine@a.gup.pe @israel @palestine@lemmy.ml

If you are using undocumented immigrants' tax records to find and kidnap them, then it was never about them paying taxes.

If you are showing up at their place of employment, then it was never about them not working.

If you are showing up at courthouses, then it was never about getting them to "do it the right way".

If you are kidnapping women and children, then it was never about criminals.

If you're refusing to give them due process, then it was never about the Constitution.

If you are building concentration camps in Florida to keep them here in cages, then it was never about the border.

If you're spending billions to do this, then it was never about the economy.

And if you're doing all this in the name of a 34 time convicted felon, then it was never about following the law.

This entry was edited (1 week ago)

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To me seems like nobody in the #UK understood what happened when zionists ousted Jeremy Corbin out of Labours' head.
syzito.xyz/@fkamiah17/11478568…


"We also have to recognise that this will go down as a dark day in our country's history. People will ask: which side were you on? And I stand with the millions of people who oppose genocide, because I am one of them. I oppose the blood-soaked hands of this government trying to silence us, so I say this loudly and proudly, on Wednesday 2nd July, we are all Palestine Action."

Zarah fucking Sultana ✊

#UKPolitics #WeAreAllPalestineAction


This entry was edited (1 week ago)

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‘Our kids cry for food’: Most Gaza families survive on one meal a day | UN News


‘Our kids cry for food’: Most Gaza families survive on one meal a day | UN News


🌐 The International Pajeet: The World's Penultimate Problem.

A treatise.

My Standing: A consulting programmer / software engineer for >20 years. I have many colleagues in IT from programmers, architects, network engineers, directors, recruiters, etc...

I have dozens of pajeets stories, both first and second hand, about their incompetence and other issues, but for this entry i really only want to focus on this point:

noauthority.social/@Bernard@fr…

This is the tinkertoy version of the problem...

in reply to Richard

Now is it the case that people doctor-up, lie, or fabricate parts of their resume?

Yes, it has happened since the invention of the resume. But pajeets do it more frequently than most.

But it is worse.

As people have pointed out, in india any retard can get a degree from a "university" for not much money, while attending few or no classes, or classes that have nothing to do with their supposed field of study.

But it is worse...

“From Palestine to Mexico, all walls have to go”, “Brick by brick, wall bij wall, fortress Europe has to fall”, “The people united will never be defeated”, “Free free Palestine”, “No borders, no nations, stop deportations”, “IND, set us free”, “IND, weg ermee”, en vele andere leuzen doorbraak.eu/vluchteling-tijde…
in reply to 𝕕𝕚𝕒𝕟𝕒 🏳️‍⚧️🦋

We used Ivanti ( Pulse Secure ) for years along with Cisco for VPN/Web portal tasks. Ivanti had one zero day after another, but it was very popular with some executives so it was kept around. It had some advantages over cisco anyconnect and I preferred it until it was obvious that it was a bad product that we shouldn't use. And Anyconnect got better, some.

PLEASE NOTIFY MY PERSONAL ASSISTANT AND LET THEM KNOW WHEN THE HANGINGS ARE! I WANT TO BE THERE PERSONALLY TO WITNESSES!
"Ratcliffe Declassifies CIA Documents – Reveals Comey, Brennan, and Clapper Purposely Corrupted Trump-Russia Investigation and Included Discredited Steele Dossier to Take Down Trump Despite Knowing It Was a Phony Report"

thegatewaypundit.com/2025/07/r… Declassifies CIA Documents – Reveals Comey, Brennan, and Clapper Purposely Corrupted Trump-Russia Investigation and Included Discredited Steele Dossier to Take Down Trump Despite Knowing It Was a Phony Report

Hubba hubba Habba
Trump Nominates Prosecutor Who Arrested Sanctuary City Mayor After Migrant Detention Mayhem
dailycaller.com
dailycaller.com/2025/07/01/tru…
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pleroma - Link to source

Ash

source:
was Eagle Scout, knew the DeMolay kids (some were in both), and they were goofy "patriotic 'Mericans"--they'd be dented skull MAGA kids today, just as their dads were goofy beta beergut MAGA tough-talker types.
One kid had a dad that was a Freemason (their Charter... leader?--whatever it's called). None of the kids except that kid went onward to join Freemasonry. I'm saying Massie could be like those kids.
They do try to get everyone 😩
Unknown parent

pleroma - Link to source

Ash

I'm not dismissing it as a nothingburger, but a "Senior DeMolay" is nearly akin to saying "Eagle Scout." The oldest you're allowed to be in DeMolay is 18-21 (depending on the state) and then you're out.
They use DeMolay like Scouts in some areas.
Each chapter IS led by a Freemason (not good), but I'd say Scouts are just as bad of a fraternity *of kids* as DeMolay (but not as bad as Freemasonry, the adult fraternity).

If he did move up and joined Freemasonry, instead of staying at the "kiddie table" as essentially a Scoutleader (he could have been 19 and stayed for a few months, and DeMolay would post this for clout, like universities do for their famous), then yeah a brow raised is very reasonable.

(I don't see a political solution anyway, so I'm not rooting for Massie as some workable angle or needing protection. I just like when he pisses them off, so I'd like him to stay in Congress for that reason alone 😆)

Rogov: Russian Armed Forces have driven the enemy out of the village of Malinovka in the Zaporizhia region in the Gulyai-Pole direction en.topwar.ru/267319-rogov-vs-r…

"Being an #anarchist is so wild. You go "I don't think #people should be able to hurt other people so easily" and people across every #political #ideology imaginable will spin their heads around and declare how they would kill #everyone remotely like you in "the perfect #world""

tumblr.com/nando161mando/78799…

8BitDo announces it's controllers now have Steam/SteamOS compatibility


These controllers were all working on SteamOS before as far as I know, so I'm interested to see what this changes. My understanding is that previously their controllers just show up as generic xbox controllers, and now they will be properly recognized. We'll see if this has any other benefits like custom bindings for back buttons and things like that.

Source

This entry was edited (1 week ago)

CONGRATULATIONS AMERICA! The June Border Statistics are in and, once again, they are the LOWEST RECORDED NUMBERS IN UNITED STATES HISTORY. The U.S. Border Patrol reported ZERO releases of Illegal Aliens into the Country. In addition, Customs and Border Protection only had 25,243 “Nationwide Encounters” throughout the entire month, which is absolutely STAGGERING, considering the Biden Administration was “encountering” tens of thousands of people every single DAY. America’s Borders are Safe and Secure, and the entire World knows it. All we need to do is keep it this way, which is exactly why Republicans need to pass “THE ONE, BIG, BEAUTIFUL BILL.” We still have Radical Left Judges trying to open the Border, and defy the Supreme Court, which is why Republicans must be smart, strong, and never let these Crazed Judges turn us into a Third World Country. The Men and Women of Border Patrol, ICE, and CBP are doing an amazing job but, they need more help and, they are counting on Republicans to, GET IT DONE!

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